Fernando Duarte Frutos

About

Biography

I am Paraguayan and moved to Spain when I was young. I began my academic journey with a BSc in Biology, then transitioned into computational biology with an MSc in Bioinformatics. This led to a bioinformatician position at the Centre for Genomic Regulation (CRG) in Barcelona. In 2024 I moved to London to work as a Bioinformatician on the Eco-Flow project at UCL.

Research interests

My main interest is building bioinformatic pipelines that are modular, reproducible, portable, and easy to run. I use Nextflow as my main tool for writing these pipelines, manage dependencies through containers and environments, and work to overcome the challenges of running computational workflows across different systems, from local workstations to High Performance Computing clusters. I’m also part of the nf-core community, using established templates and best practices to build pipelines that are robust and easy to use.

Research

Career

2014–2018: BSc in Biology, University of the Basque Country
2018–2020: MSc in Microbiology, University of the Basque Country
2020–2021: MSc in Bioinformatics, Open University of Barcelona
2022–2023: Research Assistant, National Institute of Agricultural Botany
2023–2024: Bioinformatician, Centre for Genomic Regulation
2024–present: Bioinformatician, University College London

Project

Eco-Flow: building pipelines for agri-ecologists